Tutorial — Opcom

Software for motif discovery and next generation sequencing analysis

HOMER (Hypergeometric Optimization of Motif EnRichment) is a suite of tools for Motif Discovery and ChIP-Seq analysis. It is a collection of command line programs for unix-style operating systems written in mostly perl and c++. Homer was primarily written as a de novo motif discovery algorithm that is well suited for finding 8-12 bp motifs in large scale genomics data.

Hardware Requirements (recommended): 2+ Gb memory (4-8+ Gb), 10+ Gb Hard Drive space (50+ Gb)
Software Requirements: Unix compatible OS (or cygwin), perl, gcc, make, wget (optional for full functionality: R, DESeq2, blat, bedGraphToBigWig, liftOver)
License: GPLv3

HOMER works on pretty much any Linux/UNIX systems, including MacOS (if Xcode compilers are installed) and on Windows using either cygwin or a Linux subsystem.

If you are looking specifically for HOMER2, you are in the right place! HOMER2 is integrated into HOMER.

Full Program Download

Tutorial — Opcom

OPCOM Tutorial: A Comprehensive Guide to Operations and Procedures**

In today’s fast-paced business environment, effective operations management is crucial for organizations to achieve their goals and stay competitive. One of the key tools used in operations management is OPCOM (Operations and Procedures Control). In this OPCOM tutorial, we will provide a comprehensive guide on what OPCOM is, its benefits, and how to implement it effectively. opcom tutorial

In conclusion, OPCOM is a powerful tool for managing operations and procedures within an organization. By following this OPCOM tutorial, organizations can implement OPCOM effectively, improve efficiency, enhance compliance, and reduce risk. Remember to keep it simple, involve employees, continuously monitor and review, and leverage technology to ensure a successful OPCOM implementation. OPCOM Tutorial: A Comprehensive Guide to Operations and

OPCOM is a systematic approach to managing operations and procedures within an organization. It involves identifying, documenting, and controlling the processes and procedures that are used to deliver products or services. The goal of OPCOM is to ensure that operations are carried out efficiently, effectively, and in compliance with regulatory requirements. In conclusion, OPCOM is a powerful tool for

Program Components and Older Versions

homer2 program - key executable for HOMER motif discovery (homerCppOnly.*.zip). (This archive actually contains all of the c++ executable, not just homer2). Unzip in the desired directory and simply type "make" to compile the program.

The configuration script really doesn't deal with older versions, but you can download older versions yourself should you really feel like using inferior data or software!

Old Versions of HOMER Software
Old Versions of Organism Packages
Old Versions of Promoter Packages
Old Versions of Genome Packages

Update Information

Change Log - Short description of recent changes

update.txt - Current HOMER configuration list (Currently support human hg17/hg18/hg19, mouse mm8/mm9, rat rn4, X. tropicalis xenTro2, drosophila dm3, and C. elegans ce6, Zebrafish danRer7, yeast sacCer2, Arabidopsis tair10, Rice msu6, Pombe ASM294v1)

Can't figure something out? Questions, comments, concerns, or other feedback:
cbenner@ucsd.edu